I had absolutely no problems with setting up the base stations. I have one at 1 o'clock and one at 8 o'clock about 1 m above my headlevel, they track perfectly fine. However at first plug-in they both wanted a firmware update (which i then let it update), also the BSB2e wanted a firmware update. After those updates everything ran fine with DCS right away. I am looking for additional tweaks with openvr and all that stuff. Right now i just use SteamVR and DCS basically 'naked'.
I'll share my settings as soon as i feel comfortable with them.