Thanks for the comments all.....
OK So my mission date is 2016, I have GPS switch ON, I fly for US Airforce, and yes, my landing at times can be rough as I try to flare. So based on the above, GPS should maintain constant alignment. But that is not the case.
After landing and re-arming If I take off, my way point positions are way out of alignement and not where they are suppose to be per mission plan. My hud is misaligned.
I found that after landing and re arming, a full alignment fixes this (no point in resuming the mission only to find out I'm misaligned after takeoff).
Sad thing is it take 8 LOOOONG min but it works.
Is there any other way to speed this up (say with stored heading)?