Hi,
I seem to be having this same issue and no clue on how to fix it. Up to this point, I've mainly played multiplayer. But just recently I decided to give the campaign a try and noticed I was having this issue as well. It isn't controller-specific, as I'm using an X52 Pro. However, this issue does not occur in multiplayer whatsoever, and does not occur if I create a mission through any of the mission options. It seems to only be specific to the F-15 campaign.
If I view my aircraft from the outside when the mission starts, the rudders will be aligned correctly. However, once one of the engines begins to spool, the rudders will suddenly face one direction. This makes it very difficult to take off correctly. I also noticed that once I'm no longer on the ground, the rudders will return to normal position and flying is fine. But once again upon landing, they will face the wrong direction the moment I touch the ground. I don't believe it's an issue with my controller setup, as I've said this only seems to happen in the F-15 campaign.
Anyone know what might be causing this?